ESR2 (rs4986938): Estrogen Receptor Beta

January 2026

Back to SNP Index

ESR2 encodes estrogen receptor beta (ERβ), one of two nuclear receptors that mediate estrogen's effects throughout the body. Unlike estrogen receptor alpha (ERα) which drives proliferation, ERβ often has anti-proliferative and protective effects. The rs4986938 polymorphism in the 3' untranslated region affects receptor expression, with implications for bone health, mood, cardiovascular function, and cancer risk.

Disclaimer: This information is educational. Hormone-related health concerns should be discussed with healthcare providers.

Understanding Estrogen Receptors

Estrogen signals through two main receptor types with often opposing effects:

Estrogen Receptor Alpha (ERα)

  • Encoded by ESR1 gene
  • Primary driver of estrogen's proliferative effects
  • Main mediator of breast and uterine growth
  • Dominant receptor in reproductive tissues

Estrogen Receptor Beta (ERβ)

  • Encoded by ESR2 gene
  • Often opposes ERα actions
  • Generally anti-proliferative
  • Important in brain, bone, cardiovascular, and immune systems
  • May have protective effects against certain cancers

The rs4986938 Variant

This variant is in the 3' UTR region affecting mRNA stability:

  • G allele: Reference allele
  • A allele: May affect ERβ expression levels

Understanding Your Genotype

  • G/G: Reference expression pattern
  • G/A: Heterozygous - potentially altered expression
  • A/A: Homozygous variant - potentially lower ERβ expression

Bone Health Effects

ERβ in Bone

  • ERβ expressed in osteoblasts and osteoclasts
  • Modulates bone formation and resorption
  • Works alongside ERα for bone maintenance
  • Important for estrogen's bone-protective effects

Osteoporosis Risk

  • ESR2 variants associated with bone mineral density
  • Some studies link A allele to lower BMD in women
  • Effects more pronounced after menopause
  • Interaction with estrogen status important

Fracture Risk

  • Associations with vertebral fractures in some populations
  • Hip fracture risk may be modified
  • Other genetic and lifestyle factors contribute

Mood and Brain Function

ERβ in the Brain

  • Highly expressed in hippocampus and cortex
  • Involved in neuroprotection
  • Affects anxiety and depression pathways
  • Important for cognitive function

Depression and Anxiety

  • ESR2 variants linked to depression risk in some studies
  • May affect vulnerability during hormonal transitions
  • Postpartum depression associations investigated
  • Perimenopausal mood changes may be influenced

Cognitive Effects

  • ERβ involved in memory and learning
  • Some associations with cognitive decline
  • Estrogen's neuroprotective effects partly mediated by ERβ

Cardiovascular Health

ERβ in Blood Vessels

  • Expressed in vascular endothelium and smooth muscle
  • Promotes vasodilation and vascular protection
  • Anti-inflammatory effects in blood vessels
  • May protect against atherosclerosis

Heart Disease Risk

  • ESR2 variants may modify cardiovascular risk
  • Effects may be sex-specific
  • Interaction with hormone status important
  • Blood pressure associations in some studies

Cancer Associations

ERβ's Protective Role

  • ERβ generally opposes cell proliferation
  • Often lost or reduced in tumors
  • May suppress ERα-driven growth
  • Target for cancer prevention research

Breast Cancer

  • Complex relationship with ESR2 variants
  • ERβ loss associated with worse prognosis
  • Genetic variants may affect baseline ERβ levels
  • Interaction with ERα status important

Prostate Cancer

  • ERβ expressed in prostate tissue
  • Some protective associations with ESR2 variants
  • ERβ agonists studied for prostate cancer prevention

Colon Cancer

  • ERβ dominant estrogen receptor in colon
  • May protect against colorectal cancer
  • ESR2 variants studied for CRC risk

Hormone Optimization

Supporting ERβ Function

  • Phytoestrogens: Some preferentially activate ERβ
  • Soy isoflavones: Genistein has ERβ preference
  • Lignans: Found in flaxseed, sesame
  • Equol: Soy metabolite with ERβ selectivity (not everyone produces it)

Lifestyle Factors

  • Exercise: Supports healthy estrogen metabolism
  • Maintain healthy weight: Adipose tissue affects estrogen levels
  • Limit alcohol: Affects estrogen metabolism
  • Cruciferous vegetables: Support estrogen detoxification

For Bone Health

  • Ensure adequate calcium and vitamin D
  • Weight-bearing exercise
  • Adequate protein intake
  • Consider bone density monitoring if high risk

Sex Differences

Women

  • Effects may be more pronounced
  • Particularly relevant around menopause
  • Interaction with declining estrogen levels
  • HRT considerations may be influenced

Men

  • ERβ still important in male health
  • Prostate effects particularly relevant
  • Cardiovascular implications
  • Less research on sex-specific effects

Prevalence

  • A allele frequency: Approximately 30-40% in most populations
  • Population variation: Some differences across ancestries
  • A/A genotype: About 10-15%

Testing with NutraHacker

NutraHacker's Complete Mutation Report analyzes ESR2 along with other hormone-related genes, providing insights into your estrogen response genetics.



Frequently Asked Questions

Does this variant affect my estrogen levels?

No, this variant affects your estrogen receptor, not estrogen levels themselves. It may influence how your tissues respond to estrogen. Even with normal estrogen levels, receptor variants can affect how strongly different tissues respond to estrogen signals.

Should I take phytoestrogens if I have the A/A genotype?

Phytoestrogens, particularly soy isoflavones, preferentially activate ERβ. If you have reduced ERβ expression, dietary phytoestrogens might provide some compensatory activation. However, effects are complex and individual. Moderate dietary intake of soy and other phytoestrogen-containing foods is generally considered safe and potentially beneficial.

Is this relevant for hormone replacement therapy decisions?

Potentially. ERβ variants might influence response to HRT, though this isn't yet part of standard clinical decision-making. Discuss your complete health picture with your healthcare provider when considering HRT. Genetic factors are just one piece of the puzzle alongside symptoms, risks, and preferences.

References

  1. Ogawa S, et al. Association of estrogen receptor beta gene polymorphism with bone mineral density. Biochem Biophys Res Commun. 2000;269(2):537-541.
  2. Westberg L, et al. Association between the estrogen receptor beta gene and age of onset of anorexia nervosa. Psychoneuroendocrinology. 2003;28(3):317-326.
  3. Mosselman S, et al. ER beta: identification and characterization of a novel human estrogen receptor. FEBS Lett. 1996;392(1):49-53.
Educational Content Only: The information on this page is for educational and informational purposes only and is not intended as medical advice. Genetic information should be interpreted in consultation with qualified healthcare providers. Individual health decisions should not be based solely on genetic data. NutraHacker does not diagnose, treat, cure, or prevent any disease.